HMSBEAGLE
1.0.0
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This is the complete list of members for beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE >, including all inherited members.
calcPartialsPartials(REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcPartialsPartialsAutoScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcPartialsPartialsFixedScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcRootLogLikelihoods(const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcRootLogLikelihoodsMulti(const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int *scaleBufferIndices, int count, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcStatesPartials(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcStatesPartialsFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcStatesStates(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
calcStatesStatesFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
getFlags() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
getName() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
getPaddedPatternsModulus() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_DOUBLE > | protectedvirtual |
integrateOutStatesAndScale(const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | inline |
rescalePartials(REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |
~BeagleCPU4StateImpl() (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE >) | beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_DOUBLE > | virtual |