EigenDecomposition(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | inline |
EigenDecompositionCube(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | |
firstDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
gCMatrices (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | protected |
gEigenValues (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
kCategoryCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
kEigenDecompCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
kFlags (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
kStateCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
matrixTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
secondDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | protected |
setEigenDecomposition(int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | virtual |
updateTransitionMatrices(int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | virtual |
~EigenDecomposition() (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | inlinevirtual |
~EigenDecompositionCube() (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | virtual |