HMSBEAGLE  1.0.0
KernelLauncher Member List

This is the complete list of members for KernelLauncher, including all inherited members.

AccumulateFactorsAutoScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount, unsigned int scaleBufferSize) (defined in KernelLauncher)KernelLauncher
AccumulateFactorsDynamicScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount) (defined in KernelLauncher)KernelLauncher
GetTransitionProbabilitiesSquare(GPUPtr dPtr, GPUPtr dEvec, GPUPtr dIevc, GPUPtr dEigenValues, GPUPtr distanceQueue, unsigned int totalMatrix, unsigned int index) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoods(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsAutoScaling(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsDynamicScaling(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsDynamicScalingSecondDeriv(GPUPtr dResult, GPUPtr dFirstDerivResult, GPUPtr dSecondDerivResult, GPUPtr dRootPartials, GPUPtr dRootFirstDeriv, GPUPtr dRootSecondDeriv, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsFixedScaleMulti(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dScalingFactors, GPUPtr dPtrQueue, GPUPtr dMaxScalingFactors, GPUPtr dIndexMaxScalingFactors, unsigned int patternCount, unsigned int categoryCount, unsigned int subsetCount, unsigned int subsetIndex) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsMulti(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount, unsigned int takeLog) (defined in KernelLauncher)KernelLauncher
IntegrateLikelihoodsSecondDeriv(GPUPtr dResult, GPUPtr dFirstDerivResult, GPUPtr dSecondDerivResult, GPUPtr dRootPartials, GPUPtr dRootFirstDeriv, GPUPtr dRootSecondDeriv, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
KernelLauncher(GPUInterface *inGpu) (defined in KernelLauncher)KernelLauncher
LoadKernels() (defined in KernelLauncher)KernelLauncherprotected
PartialsPartialsEdgeLikelihoods(GPUPtr dPartialsTmp, GPUPtr dParentPartials, GPUPtr dChildParials, GPUPtr dTransMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
PartialsPartialsEdgeLikelihoodsSecondDeriv(GPUPtr dPartialsTmp, GPUPtr dFirstDerivTmp, GPUPtr dSecondDerivTmp, GPUPtr dParentPartials, GPUPtr dChildParials, GPUPtr dTransMatrix, GPUPtr dFirstDerivMatrix, GPUPtr dSecondDerivMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
PartialsPartialsPruningDynamicCheckScaling(GPUPtr partials1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, int writeScalingIndex, int readScalingIndex, int cumulativeScalingIndex, GPUPtr *dScalingFactors, GPUPtr *dScalingFactorsMaster, unsigned int patternCount, unsigned int categoryCount, int doRescaling, int *hRescalingTrigger, GPUPtr dRescalingTrigger, int sizeReal) (defined in KernelLauncher)KernelLauncher
PartialsPartialsPruningDynamicScaling(GPUPtr partials1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher)KernelLauncher
RemoveFactorsDynamicScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount) (defined in KernelLauncher)KernelLauncher
RescalePartials(GPUPtr partials3, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, unsigned int fillWithOnes) (defined in KernelLauncher)KernelLauncher
SetupKernelBlocksAndGrids() (defined in KernelLauncher)KernelLauncher
StatesPartialsEdgeLikelihoods(GPUPtr dPartialsTmp, GPUPtr dParentPartials, GPUPtr dChildStates, GPUPtr dTransMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
StatesPartialsEdgeLikelihoodsSecondDeriv(GPUPtr dPartialsTmp, GPUPtr dFirstDerivTmp, GPUPtr dSecondDerivTmp, GPUPtr dParentPartials, GPUPtr dChildStates, GPUPtr dTransMatrix, GPUPtr dFirstDerivMatrix, GPUPtr dSecondDerivMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher)KernelLauncher
StatesPartialsPruningDynamicScaling(GPUPtr states1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher)KernelLauncher
StatesStatesPruningDynamicScaling(GPUPtr states1, GPUPtr states2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher)KernelLauncher
SumSites1(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher)KernelLauncher
SumSites2(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dArray2, GPUPtr dSum2, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher)KernelLauncher
SumSites3(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dArray2, GPUPtr dSum2, GPUPtr dArray3, GPUPtr dSum3, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher)KernelLauncher
~KernelLauncher() (defined in KernelLauncher)KernelLauncher