List of all members.
Public Member Functions |
| EigenDecompositionCube (int decompositionCount, int stateCount, int categoryCount, long flags) |
virtual void | setEigenDecomposition (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues) |
virtual void | updateTransitionMatrices (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count) |
| EigenDecomposition (int decompositionCount, int stateCount, int categoryCount, long flags) |
Protected Attributes |
REALTYPE ** | gCMatrices |
REALTYPE ** | gEigenValues |
int | kStateCount |
int | kEigenDecompCount |
int | kCategoryCount |
long | kFlags |
REALTYPE * | matrixTmp |
REALTYPE * | firstDerivTmp |
REALTYPE * | secondDerivTmp |
The documentation for this class was generated from the following files: