HMSBEAGLE  1.0.0
beagle::cpu::EigenDecompositionCube Member List

This is the complete list of members for beagle::cpu::EigenDecompositionCube, including all inherited members.

EigenDecomposition(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >inline
EigenDecompositionCube(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecompositionCube)beagle::cpu::EigenDecompositionCube
firstDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
gCMatrices (defined in beagle::cpu::EigenDecompositionCube)beagle::cpu::EigenDecompositionCubeprotected
gEigenValues (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
kCategoryCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
kEigenDecompCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
kFlags (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
kStateCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
matrixTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
secondDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >protected
setEigenDecomposition(int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues) (defined in beagle::cpu::EigenDecompositionCube)beagle::cpu::EigenDecompositionCubevirtual
updateTransitionMatrices(int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count) (defined in beagle::cpu::EigenDecompositionCube)beagle::cpu::EigenDecompositionCubevirtual
~EigenDecomposition() (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >)beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >inlinevirtual
~EigenDecompositionCube() (defined in beagle::cpu::EigenDecompositionCube)beagle::cpu::EigenDecompositionCubevirtual