HMSBEAGLE
1.0.0
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This is the complete list of members for KernelLauncher, including all inherited members.
AccumulateFactorsAutoScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount, unsigned int scaleBufferSize) (defined in KernelLauncher) | KernelLauncher | |
AccumulateFactorsDynamicScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount) (defined in KernelLauncher) | KernelLauncher | |
GetTransitionProbabilitiesSquare(GPUPtr dPtr, GPUPtr dEvec, GPUPtr dIevc, GPUPtr dEigenValues, GPUPtr distanceQueue, unsigned int totalMatrix, unsigned int index) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoods(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsAutoScaling(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsDynamicScaling(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsDynamicScalingSecondDeriv(GPUPtr dResult, GPUPtr dFirstDerivResult, GPUPtr dSecondDerivResult, GPUPtr dRootPartials, GPUPtr dRootFirstDeriv, GPUPtr dRootSecondDeriv, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dRootScalingFactors, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsFixedScaleMulti(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, GPUPtr dScalingFactors, GPUPtr dPtrQueue, GPUPtr dMaxScalingFactors, GPUPtr dIndexMaxScalingFactors, unsigned int patternCount, unsigned int categoryCount, unsigned int subsetCount, unsigned int subsetIndex) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsMulti(GPUPtr dResult, GPUPtr dRootPartials, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount, unsigned int takeLog) (defined in KernelLauncher) | KernelLauncher | |
IntegrateLikelihoodsSecondDeriv(GPUPtr dResult, GPUPtr dFirstDerivResult, GPUPtr dSecondDerivResult, GPUPtr dRootPartials, GPUPtr dRootFirstDeriv, GPUPtr dRootSecondDeriv, GPUPtr dWeights, GPUPtr dFrequencies, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
KernelLauncher(GPUInterface *inGpu) (defined in KernelLauncher) | KernelLauncher | |
LoadKernels() (defined in KernelLauncher) | KernelLauncher | protected |
PartialsPartialsEdgeLikelihoods(GPUPtr dPartialsTmp, GPUPtr dParentPartials, GPUPtr dChildParials, GPUPtr dTransMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
PartialsPartialsEdgeLikelihoodsSecondDeriv(GPUPtr dPartialsTmp, GPUPtr dFirstDerivTmp, GPUPtr dSecondDerivTmp, GPUPtr dParentPartials, GPUPtr dChildParials, GPUPtr dTransMatrix, GPUPtr dFirstDerivMatrix, GPUPtr dSecondDerivMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
PartialsPartialsPruningDynamicCheckScaling(GPUPtr partials1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, int writeScalingIndex, int readScalingIndex, int cumulativeScalingIndex, GPUPtr *dScalingFactors, GPUPtr *dScalingFactorsMaster, unsigned int patternCount, unsigned int categoryCount, int doRescaling, int *hRescalingTrigger, GPUPtr dRescalingTrigger, int sizeReal) (defined in KernelLauncher) | KernelLauncher | |
PartialsPartialsPruningDynamicScaling(GPUPtr partials1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher) | KernelLauncher | |
RemoveFactorsDynamicScaling(GPUPtr dScalingFactors, GPUPtr dNodePtrQueue, GPUPtr dRootScalingFactors, unsigned int nodeCount, unsigned int patternCount) (defined in KernelLauncher) | KernelLauncher | |
RescalePartials(GPUPtr partials3, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, unsigned int fillWithOnes) (defined in KernelLauncher) | KernelLauncher | |
SetupKernelBlocksAndGrids() (defined in KernelLauncher) | KernelLauncher | |
StatesPartialsEdgeLikelihoods(GPUPtr dPartialsTmp, GPUPtr dParentPartials, GPUPtr dChildStates, GPUPtr dTransMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
StatesPartialsEdgeLikelihoodsSecondDeriv(GPUPtr dPartialsTmp, GPUPtr dFirstDerivTmp, GPUPtr dSecondDerivTmp, GPUPtr dParentPartials, GPUPtr dChildStates, GPUPtr dTransMatrix, GPUPtr dFirstDerivMatrix, GPUPtr dSecondDerivMatrix, unsigned int patternCount, unsigned int categoryCount) (defined in KernelLauncher) | KernelLauncher | |
StatesPartialsPruningDynamicScaling(GPUPtr states1, GPUPtr partials2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher) | KernelLauncher | |
StatesStatesPruningDynamicScaling(GPUPtr states1, GPUPtr states2, GPUPtr partials3, GPUPtr matrices1, GPUPtr matrices2, GPUPtr scalingFactors, GPUPtr cumulativeScaling, unsigned int patternCount, unsigned int categoryCount, int doRescaling) (defined in KernelLauncher) | KernelLauncher | |
SumSites1(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher) | KernelLauncher | |
SumSites2(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dArray2, GPUPtr dSum2, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher) | KernelLauncher | |
SumSites3(GPUPtr dArray1, GPUPtr dSum1, GPUPtr dArray2, GPUPtr dSum2, GPUPtr dArray3, GPUPtr dSum3, GPUPtr dPatternWeights, unsigned int patternCount) (defined in KernelLauncher) | KernelLauncher | |
~KernelLauncher() (defined in KernelLauncher) | KernelLauncher |