HMSBEAGLE  1.0.0
beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT > Member List

This is the complete list of members for beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >, including all inherited members.

calcPartialsPartials(REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcPartialsPartialsAutoScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcPartialsPartialsFixedScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcRootLogLikelihoods(const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcRootLogLikelihoodsMulti(const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int *scaleBufferIndices, int count, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcStatesPartials(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcStatesPartialsFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcStatesStates(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
calcStatesStatesFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
getFlags() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
getName() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
getPaddedPatternsModulus() (defined in beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateSSEImpl< BEAGLE_CPU_4_SSE_FLOAT >protectedvirtual
integrateOutStatesAndScale(const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >inline
rescalePartials(REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual
~BeagleCPU4StateImpl() (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >)beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_4_SSE_FLOAT >virtual